The Master of Applied Science in Engineering (MASc) appeals to individuals who want to expand their knowledge in specific fields, as well as develop their research and analytical abilities. MASc students will typically attend a minimum of four courses and undertake a supervised thesis lasting approximately 12 months that researches an advanced engineering topic. MEng students who have completed their MEng program requirements can apply to UWindsor's fast-track MASc program, which provides them with additional research-specific training and education.

MASc programs are offered in the areas of Machine Dynamics and Design, and Thermo-Fluids.